Glyma18g44350 - SoyBase

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Report for Sequence Feature Glyma18g44350

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54072783
stop:	54077250
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g44350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G62640	AT	Annotation by Michelle Graham. TAIR10: 3-ketoacyl-acyl carrier protein synthase III \| chr1:23192502-23194737 FORWARD LENGTH=404	SoyBase	E_val: 0	ISS
GO:0000038	GO-bp	Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid metabolic process	SoyBase	N/A	ISS
GO:0006084	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process	SoyBase	N/A	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0008610	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid biosynthetic process	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0042335	GO-bp	Annotation by Michelle Graham. GO Biological Process: cuticle development	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004315	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-oxoacyl-[acyl-carrier-protein] synthase activity	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
PTHR11877	Panther	HYDROXYMETHYLGLUTARYL-COA SYNTHASE	JGI		ISS
PTHR11877:SF13	Panther		JGI		ISS
PF08541	PFAM	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal	JGI		ISS
PF08545	PFAM	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III	JGI		ISS
UniRef100_Q9M4R7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-ketoacyl-acyl carrier protein synthase III n=1 Tax=Glycine max RepID=Q9M4R7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9M4R7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Beta-ketoacyl-acyl carrier protein synthase III n=1 Tax=Glycine max RepID=Q9M4R7_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma18g44350

Locus	Gene Symbol	Protein Name
	KASIII-3	beta-ketoacyl-ACP synthetase 3 gene 3

Expression Patterns of Glyma18g44350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g44350

Paralog	Evidence	Comments
Glyma09g41380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g44350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g211400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g44350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g44350

Limit To All Plant Sequences

>Glyma18g44350.1   sequence type=CDS   gene model=Glyma18g44350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAATGCATCTGGGTTCTTCAGCCCTTCGGTTCCCCACTTCAAAGTGAGGGTTAAGCCTCTCACCACTGCCATTGGATTCTCCGCCAAAGTCGTTTGCGTTGGAAACATCGAAGGAGCTGAAAAACATGCTTCCACCGTTTCCCCTTCTTCCCAATCTCCAATACCCAGGCTTGTCAGCAAAGGGTGCAAGTTAGTTGGATGTGGCTCTGCTGTGCCAGCTCTTCAGATTTCTAATGACGATCTTTCGAAAATGGTTGATACTAATGATGAATGGATATCTGTTCGCACCGGGATTCGTAGACGGCGTGTTCTTTCAGGCAAAGATAACTTGACAGGTTTAGCAGTAGAGGCAGCTAGGAAAGCTCTTGAGATGGCAAAGGTAGACCCTGATGATCTTGACCTAATATTGATGTGCACATCTACGCCAGAGGATCTTTTTGGTAGTGCTCCACAGATTCAAAAACAACTTGGCTGCAAAGCAAATCCATTGTCTTATGACATTACAGCTGCATGTAGTGGATTTGTGTTGGGTTTAATATCAGCTGCTTGTCACATTAGGGGAGGTGGATTTAATAATGTTCTAGTTATTGGGGCGGATGCTCTCTCACGATATGTTGATTGGACAGACAGAGGGACCTGTATTCTTTTTGGGGATGCTGCTGGTGCTGTACTAGTACAGGCCTGCAACAGTGAAGAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAGGCACTTGAATGCTTCCATTAAAGAAAATGAGTCAAATAATGCATTGGATTCAAATGGTTCTGTGTTTGGCTTTCCTCCCAAGCAGTCCTCATATTCATGCATTCAAATGAACGGCAAAGAAGTCTTTCGCTTTGCTGTACGATGTGTACCACAGTCAATTGAATCTGCCCTTGAAAAGGCTGGTCTCCCTGCATCTAGCATTGATTGGCTACTTCTCCATCAGGCAAACCAGAGGATTATTGATGCAGTTGCCACTCGGTTAGAACTCCCCTCAGAACGGGTGATATCAAACTTAGCTAATTATGGTAACACAAGTGCAGCTTCCATTCCCTTGGCTTTAGATGAAGCGGTTCGAAGTGGTAAGGTTAAGGCAGGCCAAACTATTGCAACGGCCGGCTTCGGTGCCGGTCTTACTTGGGGTTCAGCAATTATTCGTTGGGGCTGA

Predicted protein sequences of Glyma18g44350

Limit To All Plant Sequences

>Glyma18g44350.1   sequence type=predicted peptide   gene model=Glyma18g44350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANASGFFSPSVPHFKVRVKPLTTAIGFSAKVVCVGNIEGAEKHASTVSPSSQSPIPRLVSKGCKLVGCGSAVPALQISNDDLSKMVDTNDEWISVRTGIRRRRVLSGKDNLTGLAVEAARKALEMAKVDPDDLDLILMCTSTPEDLFGSAPQIQKQLGCKANPLSYDITAACSGFVLGLISAACHIRGGGFNNVLVIGADALSRYVDWTDRGTCILFGDAAGAVLVQACNSEEDGLFGFDLHSDGSGQRHLNASIKENESNNALDSNGSVFGFPPKQSSYSCIQMNGKEVFRFAVRCVPQSIESALEKAGLPASSIDWLLLHQANQRIIDAVATRLELPSERVISNLANYGNTSAASIPLALDEAVRSGKVKAGQTIATAGFGAGLTWGSAIIRWG*

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